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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n1pFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1n1pFADCholesterol oxidase1.1.3.61.000
1n4wFADCholesterol oxidase1.1.3.60.902
4xxgFADCholesterol oxidase1.1.3.60.839
4xwrFADCholesterol oxidase1.1.3.60.819
3b6dFAECholesterol oxidase1.1.3.60.816
4rekFADCholesterol oxidase1.1.3.60.814
1ijhFADCholesterol oxidase1.1.3.60.780
1b8sFADCholesterol oxidase1.1.3.60.775
1n4vFADCholesterol oxidase1.1.3.60.742
3gyiFADCholesterol oxidase1.1.3.60.727
3gyjFADCholesterol oxidase1.1.3.60.723
1b4vFADCholesterol oxidase1.1.3.60.713
3cnjFADCholesterol oxidase1.1.3.60.656
1cboFADCholesterol oxidase1.1.3.60.644
4u2tFADCholesterol oxidase1.1.3.60.641
2gewFADCholesterol oxidase1.1.3.60.628