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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mgoNADAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1mgoNADAlcohol dehydrogenase E chain1.1.1.11.000
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.626
1a71NADAlcohol dehydrogenase E chain1.1.1.10.621
1adcPADAlcohol dehydrogenase E chain1.1.1.10.607
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.604
5cdsNAJAlcohol dehydrogenase E chain1.1.1.10.592
1axeNADAlcohol dehydrogenase E chain1.1.1.10.589
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.552
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.548
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.542
1axgNADAlcohol dehydrogenase E chain1.1.1.10.536
1hszNADAlcohol dehydrogenase 1B1.1.1.10.509
1ldeNADAlcohol dehydrogenase E chain1.1.1.10.507
1hldNADAlcohol dehydrogenase E chain1.1.1.10.498
1hdzNADAlcohol dehydrogenase 1B1.1.1.10.479
1ma0NADAlcohol dehydrogenase class-31.1.1.10.466
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.464
4gkvNADAlcohol dehydrogenase, propanol-preferring1.1.1.10.460
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.440