sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1mf0 | GDP | Adenylosuccinate synthetase isozyme 1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1mf0 | GDP | Adenylosuccinate synthetase isozyme 1 | / | 1.000 | |
| 1mez | GDP | Adenylosuccinate synthetase isozyme 1 | / | 0.685 | |
| 1dj3 | GDP | Adenylosuccinate synthetase, chloroplastic | / | 0.520 | |
| 1nzf | UPG | DNA beta-glucosyltransferase | / | 0.466 | |
| 3wrj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.454 | |
| 3fwj | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.447 | |
| 3fwf | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.446 | |
| 4gkm | 683 | Anthranilate phosphoribosyltransferase | / | 0.446 | |
| 2pkr | NDP | Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic | 1.2.1.13 | 0.443 | |
| 1t88 | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.442 | |
| 2qbn | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.442 | |
| 4fl3 | ANP | Tyrosine-protein kinase SYK | 2.7.10.2 | 0.442 | |
| 5c03 | AGS | Non-receptor tyrosine-protein kinase TYK2 | 2.7.10.2 | 0.442 | |
| 3fwi | CAM | Camphor 5-monooxygenase | 1.14.15.1 | 0.441 |