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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mepBTNStreptavidin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1mepBTNStreptavidin/1.000
1sweBTNStreptavidin/0.693
1swnBTNStreptavidin/0.609
1swpBTQStreptavidin/0.595
1n43BTNStreptavidin/0.590
1n9mBTNStreptavidin/0.576
1swpBTNStreptavidin/0.575
1swrBTNStreptavidin/0.558
1swdBTNStreptavidin/0.552
1nqmBTNStreptavidin/0.530
4yvbBTNStreptavidin/0.521
2zscBTNTamavidin2/0.505
3vhiVHIAvidin/0.476
4gd9BTNStreptavidin/0.460
3vhmNPKAvidin/0.446