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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lwxAZDNucleoside diphosphate kinase, cytosolic2.7.4.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1lwxAZDNucleoside diphosphate kinase, cytosolic2.7.4.61.000
1wklATPNucleoside diphosphate kinase/0.487
2az3CDPNucleoside diphosphate kinase/0.453
2rqfJH3Hemolymph juvenile hormone binding protein/0.444
1ndcTYDNucleoside diphosphate kinase, cytosolic2.7.4.60.442