Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lp6C5POrotidine 5'-phosphate decarboxylase4.1.1.23

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1lp6C5POrotidine 5'-phosphate decarboxylase4.1.1.231.000
1lolXMPOrotidine 5'-phosphate decarboxylase4.1.1.230.578
4nt03DUOrotidine 5'-phosphate decarboxylase4.1.1.230.533
2czfXMPOrotidine 5'-phosphate decarboxylase4.1.1.230.471
3uwqU5POrotidine 5'-phosphate decarboxylase/0.453
2yyuC5POrotidine 5'-phosphate decarboxylase/0.451