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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k6tXN1Gag-Pol polyprotein3.4.23.16

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1k6tXN1Gag-Pol polyprotein3.4.23.161.000
1k6cMK1Gag-Pol polyprotein3.4.23.160.648
3nwq2NCGag-Pol polyprotein3.4.23.160.593
1k6pXN3Gag-Pol polyprotein3.4.23.160.552
1k6vXN2Gag-Pol polyprotein3.4.23.160.540
3nwxKVSGag-Pol polyprotein3.4.23.160.512
3el4ROCGag-Pol polyprotein3.4.23.160.472
3nxe2NCProtease/0.469
1hpxKNIGag-Pol polyprotein/0.468
3t113T1Gag-Pol polyprotein3.4.23.160.468
1xl2189Gag-Pol polyprotein3.4.23.160.467
4j55031Gag-Pol polyprotein3.4.23.160.464
3i7eDJRGag-Pol polyprotein/0.457
1hsgMK1Gag-Pol polyprotein/0.456
1c70L75Protease/0.446
1fej2NCGag-Pol polyprotein3.4.23.160.445
2bpw1INGag-Pol polyprotein3.4.23.160.444
2r43G3GGag-Pol polyprotein3.4.23.160.442