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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.291.000
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.674
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.619
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.556
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.531
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.527
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.523
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.519
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.505
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.493
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.490
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.488
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.485
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.480
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.470
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.468
3rsv3RSBeta-secretase 13.4.23.460.466
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.461
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.460
2xviFADPutative flavin-containing monooxygenase/0.458
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.458
4ms1381Gamma-aminobutyric acid type B receptor subunit 1/0.458
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.457
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.453
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.450
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.447
4fse0VABeta-secretase 13.4.23.460.446
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.446
4b7754MBeta-secretase 13.4.23.460.444
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.443
1pxgPRFQueuine tRNA-ribosyltransferase2.4.2.290.442