sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1jvs	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1jvs	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	1.000
3anm	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	0.557
1t1r	IMB	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	0.549
3anl	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	0.540
1t1s	CBQ	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	0.494
2jcv	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	/	0.458
2jcx	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	/	0.452
4aic	NDP	1-deoxy-D-xylulose 5-phosphate reductoisomerase	/	0.443