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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.13

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.131.000
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.580
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.575
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.568
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.562
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.555
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.552
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.550
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.549
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.542
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.540
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.540
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.538
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.538
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.535
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.534
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.529
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.529
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.526
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.522
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.520
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.519
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.518
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.517
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.513
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.512
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.511
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.511
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.511
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.509
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.507
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.504
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.504
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.495
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.495
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.488
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.487
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.486
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.484
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.483
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.482
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.481
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.478
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.476
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.469
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.469
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.468
1j0xNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.462
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.460
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.459
1ihyAPRGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.453
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.453
2d2iNAPGlyceraldehyde-3-phosphate dehydrogenase/0.443