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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jf2CZHObelin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1jf2CZHObelin/1.000
1el4CTZObelin/0.625
4n1fCZHObelin/0.621
1uhhCZPAequorin-2/0.611
1jf0CZHObelin/0.601
1qv0CZHObelin/0.597
4nqgCZHMitrocomin/0.597
1s36CEIObelin/0.595
1ej3CZHAequorin-2/0.592
1uhjCZBAequorin-2/0.591
4mrxCZHObelin/0.590
1qv1CZHObelin/0.559
1ry0PG2Aldo-keto reductase family 1 member C3/0.471
3br3ETHTH-type transcriptional regulator QacR/0.470
3pm1ETHTH-type transcriptional regulator QacR/0.465
3gncQQQGlutaryl-CoA dehydrogenase/0.459
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.455
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.455
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.453
4jq4IMNAldo-keto reductase family 1 member C2/0.452
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.450
5cc9DDFDihydrofolate reductase1.5.1.30.449
2rqfJH3Hemolymph juvenile hormone binding protein/0.448
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.448
2wu4HBPAcetylcholinesterase3.1.1.70.447
2po7CHDFerrochelatase, mitochondrial4.99.1.10.441
1k2sH4BNitric oxide synthase, brain1.14.13.390.440
1s7gNADNAD-dependent protein deacylase 2/0.440
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.440
3h3t16HCollagen type IV alpha-3-binding protein/0.440
3r7mSUZAldo-keto reductase family 1 member C3/0.440