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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jehFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1jehFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.41.000
2qaeFADDihydrolipoyl dehydrogenase1.8.1.40.602
2f5zFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.588
3rnmFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.567
2yquFADDihydrolipoyl dehydrogenase/0.554
2eq9FADDihydrolipoyl dehydrogenase/0.547
1zy8FADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.546
3urhFADDihydrolipoyl dehydrogenase/0.524
1lpfFADDihydrolipoyl dehydrogenase1.8.1.40.518
4jq9FADDihydrolipoyl dehydrogenase/0.512
3ladFADDihydrolipoyl dehydrogenase/0.511
4jdrFADDihydrolipoyl dehydrogenase1.8.1.40.510
1zmcFADDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.506
2eq6FADDihydrolipoyl dehydrogenase/0.456
4m52FADDihydrolipoyl dehydrogenase1.8.1.40.456
1zk7FADMercuric reductase1.16.1.10.449
2a8xFADDihydrolipoyl dehydrogenase1.8.1.40.444
1zx9FADMercuric reductase1.16.1.10.440