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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ivsVAAValine--tRNA ligase6.1.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ivsVAAValine--tRNA ligase6.1.1.91.000
1gaxVAAValine--tRNA ligase6.1.1.90.653
1pfyMSPMethionine--tRNA ligase6.1.1.100.467
3coy53HPantothenate synthetase6.3.2.10.455
4py243EMethionine--tRNA ligase/0.451
5kwvANPPantothenate synthetase/0.445
2cv2GSUGlutamate--tRNA ligase6.1.1.170.444