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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ijhFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ijhFADCholesterol oxidase1.1.3.61.000
1mxtFAECholesterol oxidase1.1.3.60.846
1n4vFADCholesterol oxidase1.1.3.60.844
4xwrFADCholesterol oxidase1.1.3.60.823
1b4vFADCholesterol oxidase1.1.3.60.822
4xxgFADCholesterol oxidase1.1.3.60.820
1n4uFAECholesterol oxidase1.1.3.60.807
1b8sFADCholesterol oxidase1.1.3.60.780
4rekFADCholesterol oxidase1.1.3.60.750
3gyiFADCholesterol oxidase1.1.3.60.747
3gyjFADCholesterol oxidase1.1.3.60.725
1cboFADCholesterol oxidase1.1.3.60.719
1cc2FADCholesterol oxidase1.1.3.60.700
4u2sFDACholesterol oxidase1.1.3.60.686
3b6dFAECholesterol oxidase1.1.3.60.647
3cnjFADCholesterol oxidase1.1.3.60.630
1n1pFADCholesterol oxidase1.1.3.60.626
1n4wFADCholesterol oxidase1.1.3.60.625
4u2tFADCholesterol oxidase1.1.3.60.532
4u2lSFDCholesterol oxidase1.1.3.60.526
2gewFADCholesterol oxidase1.1.3.60.496
3coxFADCholesterol oxidase1.1.3.60.473