Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i5aACPChemotaxis protein CheA2.7.13.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1i5aACPChemotaxis protein CheA2.7.13.31.000
1i5bANPChemotaxis protein CheA2.7.13.30.724
1i59ANPChemotaxis protein CheA2.7.13.30.576
1i59ADPChemotaxis protein CheA2.7.13.30.507
1i5cADPChemotaxis protein CheA2.7.13.30.505
1i58ACPChemotaxis protein CheA2.7.13.30.492
1i58ADPChemotaxis protein CheA2.7.13.30.455