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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hquHBYGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1hquHBYGag-Pol polyprotein2.7.7.491.000
1hnvTBOGag-Pol polyprotein2.7.7.490.575
1hpzAAPGag-Pol polyprotein2.7.7.490.564
4i7fNVEGag-Pol polyprotein2.7.7.490.523
3ffi3OBGag-Pol polyprotein2.7.7.490.514
3i0rRT3Gag-Pol polyprotein2.7.7.490.510
1c1bGCAGag-Pol polyprotein2.7.7.490.497
1revTB9Gag-Pol polyprotein2.7.7.490.487
1tktH12Gag-Pol polyprotein2.7.7.490.483
2ic3HBYGag-Pol polyprotein2.7.7.490.480
3di6PDZGag-Pol polyprotein2.7.7.490.467
3irxUDRGag-Pol polyprotein2.7.7.490.461
1s9eADBGag-Pol polyprotein2.7.7.490.460
2ze2T27Gag-Pol polyprotein2.7.7.490.459
2ban357Gag-Pol polyprotein2.7.7.490.458
3m8qDJZGag-Pol polyprotein2.7.7.490.457
3lamKRPGag-Pol polyprotein2.7.7.490.451
1tvrTB9Gag-Pol polyprotein2.7.7.490.444
1ikxPNUGag-Pol polyprotein2.7.7.490.443
1s6qTPBGag-Pol polyprotein2.7.7.490.442
1rt2TNKGag-Pol polyprotein2.7.7.490.441
3kjsNAPBifunctional dihydrofolate reductase-thymidylate synthase/0.441