Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h83FADPolyamine oxidase1.5.3.14

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1h83FADPolyamine oxidase1.5.3.141.000
3kpfFADPolyamine oxidase1.5.3.140.619
1h81FADPolyamine oxidase1.5.3.140.557
1xpqFADPolyamine oxidase FMS1/0.547
4fwjFADLysine-specific histone demethylase 1B10.530
2hkoFADLysine-specific histone demethylase 1A10.524
3bi5FADPolyamine oxidase FMS1/0.523
4gdpFADPolyamine oxidase FMS1/0.523
1z6lFADPolyamine oxidase FMS1/0.521
3bi2FADPolyamine oxidase FMS1/0.515
3nn6HNK6-hydroxy-L-nicotine oxidase/0.515
4gutFADLysine-specific histone demethylase 1B10.513
2yg4FADPutrescine oxidase/0.512
3cn8FADPolyamine oxidase FMS1/0.508
4echFADPolyamine oxidase FMS1/0.507
2vvlFADMonoamine oxidase N1.4.3.40.500
2yg5FADPutrescine oxidase/0.497
3cntFADPolyamine oxidase FMS1/0.490
4fweFADLysine-specific histone demethylase 1B10.486
2dw4FADLysine-specific histone demethylase 1A10.483
3cndFADPolyamine oxidase FMS1/0.483
3k7tFAD6-hydroxy-L-nicotine oxidase/0.481
3we0FADLysine 2-monooxygenase/0.481
3k7mFAD6-hydroxy-L-nicotine oxidase/0.480
2iw5FADLysine-specific histone demethylase 1A10.476
2uxxFAJLysine-specific histone demethylase 1A10.471
2yg3FADPutrescine oxidase/0.464
5l3dFADLysine-specific histone demethylase 1A10.462
3rhaFDAPutrescine oxidase/0.457
2wd8VGFPteridine reductase/0.456
5iqdGNPBifunctional AAC/APH2.3.10.456
3zdnFADMonoamine oxidase N1.4.3.40.455
2yg7FADPutrescine oxidase/0.446
5iqaGNPBifunctional AAC/APH2.3.10.442
4guuFA9Lysine-specific histone demethylase 1B10.440