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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h63FMNPentaerythritol tetranitrate reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1h63FMNPentaerythritol tetranitrate reductase/1.000
3f03FMNPentaerythritol tetranitrate reductase/0.669
3p74FMNPentaerythritol tetranitrate reductase/0.644
2abbFMNPentaerythritol tetranitrate reductase/0.636
3p62FMNPentaerythritol tetranitrate reductase/0.597
1h50FMNPentaerythritol tetranitrate reductase/0.595
3p82FMNPentaerythritol tetranitrate reductase/0.590
3p8jFMNPentaerythritol tetranitrate reductase/0.579
1vyrFMNPentaerythritol tetranitrate reductase/0.559
3p67FMNPentaerythritol tetranitrate reductase/0.558
3p84FMNPentaerythritol tetranitrate reductase/0.554
3p8iFMNPentaerythritol tetranitrate reductase/0.538
1icsFMN12-oxophytodienoate reductase 11.3.1.420.531
1h51FMNPentaerythritol tetranitrate reductase/0.527
4jicFMNGTN Reductase/0.520
1icqFMN12-oxophytodienoate reductase 11.3.1.420.519
1icpFMN12-oxophytodienoate reductase 11.3.1.420.506
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.493
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.488
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.481
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.476
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.476
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.473
4e2dFMNDehydrogenase/0.469
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.468
1q45FMN12-oxophytodienoate reductase 31.3.1.420.467
3atzFMNProstaglandin F2a synthase/0.466
4e2bFMNDehydrogenase/0.466
3gkaFMNN-ethylmaleimide reductase/0.465
4tmbFMNOld yellow enzyme/0.461
1bwlFMNNADPH dehydrogenase 11.6.99.10.458
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.450
4df2FMNNADPH dehydrogenase/0.447
3atyFMNProstaglandin F2a synthase/0.445
4m5pFMNNADPH dehydrogenase/0.441
4rnuFMNNADPH dehydrogenase 11.6.99.10.441
1oycFMNNADPH dehydrogenase 11.6.99.10.440