sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1gtr	ATP	Glutamine--tRNA ligase	6.1.1.18

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1gtr	ATP	Glutamine--tRNA ligase	6.1.1.18	1.000
1qrt	ATP	Glutamine--tRNA ligase	6.1.1.18	0.739
1qru	ATP	Glutamine--tRNA ligase	6.1.1.18	0.699
1qrs	ATP	Glutamine--tRNA ligase	6.1.1.18	0.666
1qtq	QSI	Glutamine--tRNA ligase	6.1.1.18	0.632
4jxx	ATP	Glutamine--tRNA ligase	6.1.1.18	0.616
1euy	QSI	Glutamine--tRNA ligase	6.1.1.18	0.610
4jyz	ATP	Glutamine--tRNA ligase	6.1.1.18	0.607
4jxz	ATP	Glutamine--tRNA ligase	6.1.1.18	0.596
2re8	GSU	Glutamine--tRNA ligase	6.1.1.18	0.576
2rd2	QSI	Glutamine--tRNA ligase	6.1.1.18	0.566