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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gp6QUELeucoanthocyanidin dioxygenase1.14.11.19

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1gp6QUELeucoanthocyanidin dioxygenase1.14.11.191.000
1gp6DH2Leucoanthocyanidin dioxygenase1.14.11.190.970
1gp5DQHLeucoanthocyanidin dioxygenase1.14.11.190.685
1gp5DH2Leucoanthocyanidin dioxygenase1.14.11.190.650
2brtNARLeucoanthocyanidin dioxygenase1.14.11.190.576