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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gaeNADGlyceraldehyde-3-phosphate dehydrogenase A

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1gaeNADGlyceraldehyde-3-phosphate dehydrogenase A/1.000
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.499
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.497
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.488
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.481
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.478
1ihyAPRGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.477
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.462
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.457
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.455
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.451
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.450
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.447
2iko7IGRenin3.4.23.150.445