sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1g8o | U5P | N-acetyllactosaminide alpha-1,3-galactosyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1g8o | U5P | N-acetyllactosaminide alpha-1,3-galactosyltransferase | / | 1.000 | |
| 3v0m | 5GW | Histo-blood group ABO system transferase | / | 0.557 | |
| 4kc2 | WS2 | Histo-blood group ABO system transferase | / | 0.549 | |
| 4kc1 | WS1 | Histo-blood group ABO system transferase | / | 0.534 | |
| 1g93 | UPG | N-acetyllactosaminide alpha-1,3-galactosyltransferase | / | 0.513 | |
| 2vs5 | GDU | N-acetyllactosaminide alpha-1,3-galactosyltransferase | / | 0.503 | |
| 3v0p | 4GW | Histo-blood group ABO system transferase | / | 0.499 | |
| 5c1g | GDU | Histo-blood group ABO system transferase | / | 0.498 | |
| 3v0o | 4GW | Histo-blood group ABO system transferase | / | 0.491 | |
| 2vfz | UPF | N-acetyllactosaminide alpha-1,3-galactosyltransferase | / | 0.489 | |
| 4kc4 | WS3 | Histo-blood group ABO system transferase | / | 0.483 | |
| 5c3a | URM | Histo-blood group ABO system transferase | / | 0.482 | |
| 3dy8 | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.456 | |
| 1blz | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.447 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.440 |