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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g3lTRHGlucose-1-phosphate thymidylyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1g3lTRHGlucose-1-phosphate thymidylyltransferase/1.000
1h5sTMPGlucose-1-phosphate thymidylyltransferase 1/0.521
1iinUPGGlucose-1-phosphate thymidylyltransferase2.7.7.240.508
1mp5UPGGlucose-1-phosphate thymidylyltransferase2.7.7.240.497
1h5tDAUGlucose-1-phosphate thymidylyltransferase 1/0.494
4ho3TTPGlucose-1-phosphate thymidylyltransferase/0.493
1h5rTHMGlucose-1-phosphate thymidylyltransferase 1/0.491
4ho2THMGlucose-1-phosphate thymidylyltransferase/0.467
4ho9GDUGlucose-1-phosphate thymidylyltransferase/0.441