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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g2aBB2Peptide deformylase3.5.1.88

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1g2aBB2Peptide deformylase3.5.1.881.000
1g27BB1Peptide deformylase3.5.1.880.569
1lruBB2Peptide deformylase3.5.1.880.510
3k6l2BBPeptide deformylase3.5.1.880.504
4wxlBB2Peptide deformylase/0.486
4e9aQAPPeptide deformylase/0.448
3wfjNAD2-dehydropantoate 2-reductase/0.443