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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1esmCOAPantothenate kinase2.7.1.33

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1esmCOAPantothenate kinase2.7.1.331.000
2zsbADPPantothenate kinase2.7.1.330.577
2getCOKPantothenate kinase2.7.1.330.569
3aezGDPPantothenate kinase2.7.1.330.568
3af3GCPPantothenate kinase2.7.1.330.556
2zsaADPPantothenate kinase2.7.1.330.552
2gesCOKPantothenate kinase2.7.1.330.551
2zs8ADPPantothenate kinase2.7.1.330.543
3af2ACPPantothenate kinase2.7.1.330.542
3af4GCPPantothenate kinase2.7.1.330.540
4bfsZVSPantothenate kinase2.7.1.330.535
2zsdCOAPantothenate kinase2.7.1.330.530
3tqcADPPantothenate kinase/0.512
2geuCOKPantothenate kinase2.7.1.330.511
2gevCOKPantothenate kinase2.7.1.330.503
3af0GDPPantothenate kinase2.7.1.330.502
3af1GDPPantothenate kinase2.7.1.330.501
2zs9ADPPantothenate kinase2.7.1.330.496
4bftZVTPantothenate kinase2.7.1.330.487
2zseACPPantothenate kinase2.7.1.330.484
4bfxZVXPantothenate kinase2.7.1.330.464