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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1eqhFLPProstaglandin G/H synthase 11.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1eqhFLPProstaglandin G/H synthase 11.14.99.11.000
1eqgIBPProstaglandin G/H synthase 11.14.99.10.765
1ht834CProstaglandin G/H synthase 11.14.99.10.637
1q4gBFLProstaglandin G/H synthase 11.14.99.10.629
2aylFLPProstaglandin G/H synthase 11.14.99.10.606
3n8zFLPProstaglandin G/H synthase 11.14.99.10.576
3n8wFLPProstaglandin G/H synthase 11.14.99.10.574
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.561
3n8xNIMProstaglandin G/H synthase 11.14.99.10.558
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.551
2oyuIMSProstaglandin G/H synthase 11.14.99.10.547
3ntgD72Prostaglandin G/H synthase 21.14.99.10.513
3n8yDIFProstaglandin G/H synthase 11.14.99.10.511
4ph9IBPProstaglandin G/H synthase 21.14.99.10.510
3rr3FLRProstaglandin G/H synthase 21.14.99.10.508
5ikrID8Prostaglandin G/H synthase 21.14.99.10.499
4coxIMNProstaglandin G/H synthase 21.14.99.10.489
3q7dNPXProstaglandin G/H synthase 21.14.99.10.488
3pghFLPProstaglandin G/H synthase 21.14.99.10.483
3mqe416Prostaglandin G/H synthase 21.14.99.10.470
4rrxLURProstaglandin G/H synthase 21.14.99.10.450
4m10ICDProstaglandin G/H synthase 21.14.99.10.448