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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1eqgIBPProstaglandin G/H synthase 11.14.99.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1eqgIBPProstaglandin G/H synthase 11.14.99.11.000
1eqhFLPProstaglandin G/H synthase 11.14.99.10.789
1q4gBFLProstaglandin G/H synthase 11.14.99.10.648
2aylFLPProstaglandin G/H synthase 11.14.99.10.642
1ht834CProstaglandin G/H synthase 11.14.99.10.627
3n8zFLPProstaglandin G/H synthase 11.14.99.10.593
3n8xNIMProstaglandin G/H synthase 11.14.99.10.592
3n8wFLPProstaglandin G/H synthase 11.14.99.10.585
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.569
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.559
2oyuIMSProstaglandin G/H synthase 11.14.99.10.554
3ntgD72Prostaglandin G/H synthase 21.14.99.10.550
3pghFLPProstaglandin G/H synthase 21.14.99.10.546
4ph9IBPProstaglandin G/H synthase 21.14.99.10.533
3n8yDIFProstaglandin G/H synthase 11.14.99.10.522
3q7dNPXProstaglandin G/H synthase 21.14.99.10.516
5ikrID8Prostaglandin G/H synthase 21.14.99.10.516
3rr3FLRProstaglandin G/H synthase 21.14.99.10.515
4coxIMNProstaglandin G/H synthase 21.14.99.10.510
3mqe416Prostaglandin G/H synthase 21.14.99.10.485
4rrxLURProstaglandin G/H synthase 21.14.99.10.470
4m10ICDProstaglandin G/H synthase 21.14.99.10.456