sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1ej3 | CZH | Aequorin-2 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1ej3 | CZH | Aequorin-2 | / | 1.000 | |
| 1uhj | CZB | Aequorin-2 | / | 0.654 | |
| 1uhh | CZP | Aequorin-2 | / | 0.650 | |
| 1qv1 | CZH | Obelin | / | 0.621 | |
| 4nqg | CZH | Mitrocomin | / | 0.609 | |
| 1el4 | CTZ | Obelin | / | 0.608 | |
| 4n1f | CZH | Obelin | / | 0.603 | |
| 1jf0 | CZH | Obelin | / | 0.594 | |
| 1qv0 | CZH | Obelin | / | 0.593 | |
| 1jf2 | CZH | Obelin | / | 0.591 | |
| 1s36 | CEI | Obelin | / | 0.553 | |
| 4mrx | CZH | Obelin | / | 0.543 | |
| 1ry0 | PG2 | Aldo-keto reductase family 1 member C3 | / | 0.469 | |
| 3dyl | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.464 | |
| 3qi4 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.460 | |
| 4pnm | NU1 | Tankyrase-2 | 2.4.2.30 | 0.457 | |
| 2xuf | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 2zev | IPE | Geranylgeranyl pyrophosphate synthase | / | 0.453 | |
| 1q0z | AKA | Aclacinomycin methylesterase RdmC | 3.1.1.95 | 0.451 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.451 | |
| 3dyq | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.451 | |
| 2d06 | EST | Sulfotransferase 1A1 | 2.8.2.1 | 0.450 | |
| 3jq8 | DX3 | Pteridine reductase, putative | / | 0.450 | |
| 4b11 | 7I1 | Glycylpeptide N-tetradecanoyltransferase | / | 0.450 | |
| 1ah3 | TOL | Aldose reductase | 1.1.1.21 | 0.449 | |
| 3bmn | AX3 | Pteridine reductase | / | 0.449 | |
| 3h3t | 16H | Collagen type IV alpha-3-binding protein | / | 0.449 | |
| 4kla | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.449 | |
| 4g2l | 0WL | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.448 | |
| 1x1a | SAM | C-20 methyltransferase | / | 0.447 | |
| 2yy2 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.447 | |
| 4a95 | 9MT | Glycylpeptide N-tetradecanoyltransferase | / | 0.446 | |
| 1icq | OPD | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.445 | |
| 1zgc | A2E | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 1ry8 | RUT | Aldo-keto reductase family 1 member C3 | / | 0.443 | |
| 3c1o | NAP | Eugenol synthase | / | 0.443 | |
| 2xug | TZ4 | Acetylcholinesterase | 3.1.1.7 | 0.441 | |
| 4b14 | 4XB | Glycylpeptide N-tetradecanoyltransferase | / | 0.441 | |
| 4e0u | 0MV | Cyclic dipeptide N-prenyltransferase | / | 0.441 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.441 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 2f38 | 15M | Aldo-keto reductase family 1 member C3 | / | 0.440 | |
| 3p9t | TCL | Repressor | / | 0.440 | |
| 4dbu | BT9 | Aldo-keto reductase family 1 member C3 | / | 0.440 |