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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.291.000
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.540
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.535
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.518
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.508
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.507
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.506
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.500
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.499
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.499
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.492
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.492
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.485
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.481
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.477
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.473
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.454
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.443
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.441
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.440