sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1dlr | MXA | Dihydrofolate reductase | 1.5.1.3 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1dlr | MXA | Dihydrofolate reductase | 1.5.1.3 | 1.000 | |
| 3k47 | D09 | Dihydrofolate reductase | 1.5.1.3 | 0.578 | |
| 3nxt | D2E | Dihydrofolate reductase | 1.5.1.3 | 0.576 | |
| 3nxo | D2B | Dihydrofolate reductase | 1.5.1.3 | 0.570 | |
| 4kfj | 1R0 | Dihydrofolate reductase | 1.5.1.3 | 0.570 | |
| 4qjc | IXE | Dihydrofolate reductase | 1.5.1.3 | 0.560 | |
| 1s3w | TQT | Dihydrofolate reductase | 1.5.1.3 | 0.550 | |
| 1pd8 | CO4 | Dihydrofolate reductase | 1.5.1.3 | 0.546 | |
| 2w3a | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.546 | |
| 3nxy | D2H | Dihydrofolate reductase | 1.5.1.3 | 0.545 | |
| 4kbn | 25U | Dihydrofolate reductase | 1.5.1.3 | 0.542 | |
| 3nxv | D2F | Dihydrofolate reductase | 1.5.1.3 | 0.540 | |
| 4kak | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.539 | |
| 4ddr | MMV | Dihydrofolate reductase | 1.5.1.3 | 0.535 | |
| 3nxr | D2D | Dihydrofolate reductase | 1.5.1.3 | 0.532 | |
| 1hfr | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.525 | |
| 3oaf | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.525 | |
| 3d84 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.522 | |
| 4kd7 | 9DR | Dihydrofolate reductase | 1.5.1.3 | 0.513 | |
| 1pd9 | CO4 | Dihydrofolate reductase | 1.5.1.3 | 0.491 | |
| 1hfp | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.490 | |
| 1u72 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.489 | |
| 3cse | N22 | Uncharacterized protein | / | 0.488 | |
| 3nxx | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.482 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.472 | |
| 2fzj | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.470 | |
| 4keb | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.469 | |
| 1dr4 | HBI | Dihydrofolate reductase | 1.5.1.3 | 0.467 | |
| 3gi2 | GHW | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 1kms | LIH | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 1ohj | COP | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 1boz | PRD | Dihydrofolate reductase | 1.5.1.3 | 0.458 | |
| 2w3m | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 3k3h | BYE | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.455 | |
| 3ntz | 3TZ | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
| 1s3u | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 1s3v | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 3eek | 53S | Uncharacterized protein | / | 0.447 | |
| 3wd9 | QPC | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.447 | |
| 4rh1 | 0TT | Spore photoproduct lyase | / | 0.446 | |
| 2psj | CEI | Renilla-luciferin 2-monooxygenase | 1.13.12.5 | 0.445 | |
| 4gi2 | NAP | Crotonyl-CoA carboxylase/reductase | / | 0.444 | |
| 1udt | VIA | cGMP-specific 3',5'-cyclic phosphodiesterase | / | 0.441 |