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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dayGNPCasein kinase II subunit alpha2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1dayGNPCasein kinase II subunit alpha2.7.11.11.000
1dawANPCasein kinase II subunit alpha2.7.11.10.676
4anmWULCasein kinase II subunit alpha2.7.11.10.532
3be9P04Casein kinase II subunit alpha2.7.11.10.513
4lfiGNPCasein kinase II subunit alpha2.7.11.10.494
2pvlP55Casein kinase II subunit alpha2.7.11.10.485
2pvhP19Casein kinase II subunit alpha2.7.11.10.484
2pvmP29Casein kinase II subunit alpha2.7.11.10.466
4dgnLU2Casein kinase II subunit alpha2.7.11.10.452
1lp4ANPCasein kinase II subunit alpha2.7.11.10.448
1m2pHNACasein kinase II subunit alpha2.7.11.10.446
3q9xEMOCasein kinase II subunit alpha2.7.11.10.444