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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d7yFADFerredoxin reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1d7yFADFerredoxin reductase/1.000
4h4sFADBiphenyl dioxygenase ferredoxin reductase subunit/0.583
2gqwFADFerredoxin reductase/0.572
4h4vFADBiphenyl dioxygenase ferredoxin reductase subunit/0.565
4h4zFADBiphenyl dioxygenase ferredoxin reductase subunit/0.558
4h4tFADBiphenyl dioxygenase ferredoxin reductase subunit/0.550
4h4qFADBiphenyl dioxygenase ferredoxin reductase subunit/0.547
4h4rFADBiphenyl dioxygenase ferredoxin reductase subunit/0.544
2gr3FADFerredoxin reductase/0.541
3ef6FADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.532
4h4pFADBiphenyl dioxygenase ferredoxin reductase subunit/0.528
4emjFADToluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component1.18.1.30.504
5fs6FADApoptosis-inducing factor 1, mitochondrial1.1.10.503
3lb8FADPutidaredoxin reductase1.18.1.50.487
3kljFADNADH-rubredoxin oxidoreductase1.18.1.10.475
1m6iFADApoptosis-inducing factor 1, mitochondrial1.1.10.472
3gd3FADApoptosis-inducing factor 1, mitochondrial1.1.10.461
4jdrFADDihydrolipoyl dehydrogenase1.8.1.40.461
2gr0FADFerredoxin reductase/0.459
5fs9FADApoptosis-inducing factor 1, mitochondrial1.1.10.457
3cgcFADCoenzyme A disulfide reductase/0.448
1zx9FADMercuric reductase1.16.1.10.445
3ictFADCoenzyme A disulfide reductase/0.445
4bv6FADApoptosis-inducing factor 1, mitochondrial1.1.10.445