sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1d7o | TCL | Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic | 1.3.1.9 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1d7o | TCL | Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic | 1.3.1.9 | 1.000 | |
| 4tzk | 641 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.557 | |
| 4igf | CHV | Enoyl-acyl carrier reductase | / | 0.547 | |
| 4tzt | 468 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.516 | |
| 2b36 | 5PP | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.510 | |
| 3fnh | JPJ | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.485 | |
| 1uh5 | TCL | Enoyl-ACP reductase | / | 0.484 | |
| 3uic | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.483 | |
| 4trj | 665 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.481 | |
| 3uic | 09T | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.480 | |
| 3lsy | FT0 | Enoyl-ACP reductase | / | 0.474 | |
| 2o2y | TCL | Enoyl-ACP reductase | / | 0.473 | |
| 2op0 | 7PC | Enoyl-ACP reductase | / | 0.472 | |
| 4u0k | 744 | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.472 | |
| 1soj | IBM | cGMP-inhibited 3',5'-cyclic phosphodiesterase B | 3.1.4.17 | 0.470 | |
| 1fmj | RTL | Retinol dehydratase | / | 0.469 | |
| 1q1r | FAD | Putidaredoxin reductase | 1.18.1.5 | 0.467 | |
| 2nnq | T4B | Fatty acid-binding protein, adipocyte | / | 0.465 | |
| 2vbp | VB1 | Isopenicillin N synthase | 1.21.3.1 | 0.465 | |
| 1x8l | OXR | Retinol dehydratase | / | 0.463 | |
| 4e37 | NDP | Catalase | 1.11.1.6 | 0.463 | |
| 1pax | DHQ | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.462 | |
| 4zju | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.462 | |
| 2e0n | SAH | Precorrin-2 C20-methyltransferase | / | 0.460 | |
| 2hqp | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 1bvr | THT | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.459 | |
| 2foi | JPA | Enoyl-acyl carrier reductase | / | 0.459 | |
| 2b35 | TCL | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.456 | |
| 3h4v | DVP | Pteridine reductase 1 | 1.5.1.33 | 0.456 | |
| 1rr6 | IMH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.454 | |
| 5cp8 | TCU | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.454 | |
| 1zsn | TN2 | Enoyl-ACP reductase | / | 0.453 | |
| 2o2s | TCL | Enoyl-acyl carrier reductase | / | 0.453 | |
| 3f4b | TCL | Enoyl-acyl carrier protein reductase | / | 0.453 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.453 | |
| 5cpb | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.452 | |
| 3lt1 | FT2 | Enoyl-ACP reductase | / | 0.451 | |
| 1nhw | TCC | Enoyl-ACP reductase | / | 0.450 | |
| 4bii | PYW | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.450 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.450 | |
| 1zw1 | TN5 | Enoyl-ACP reductase | / | 0.449 | |
| 2wo7 | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.449 | |
| 1xh5 | R68 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.448 | |
| 2xvv | 9DN | Serum albumin | / | 0.448 | |
| 3b9l | AZZ | Serum albumin | / | 0.448 | |
| 3nj8 | NJ8 | Enoyl-acyl carrier reductase | / | 0.448 | |
| 3p8i | FMN | Pentaerythritol tetranitrate reductase | / | 0.448 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.447 | |
| 3jyp | NAD | Quinate/shikimate dehydrogenase (NAD(+)) | / | 0.447 | |
| 4q71 | FAD | Bifunctional protein PutA | / | 0.447 | |
| 1cqp | 803 | Integrin alpha-L | / | 0.446 | |
| 1zkn | IBM | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.446 | |
| 4mv1 | ADP | Biotin carboxylase | 6.3.4.14 | 0.446 | |
| 1nhg | TCL | Enoyl-ACP reductase | / | 0.445 | |
| 4hni | 16W | Casein kinase I isoform epsilon | 2.7.11.1 | 0.445 | |
| 1d6w | 00R | Prothrombin | 3.4.21.5 | 0.444 | |
| 2nmt | MIM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 0.444 | |
| 3am5 | TCL | Enoyl-ACP reductase | / | 0.444 | |
| 3nmp | PYV | Abscisic acid receptor PYL2 | / | 0.444 | |
| 1eno | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic | 1.3.1.9 | 0.443 | |
| 1g6k | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.443 | |
| 2dw4 | FAD | Lysine-specific histone demethylase 1A | 1 | 0.443 | |
| 3vil | SA0 | Beta-glucosidase | / | 0.443 | |
| 4bgi | I4I | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.443 | |
| 4djw | 0KP | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 4dxl | C5P | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.443 | |
| 2b36 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.442 | |
| 2c9z | QUE | Anthocyanidin 3-O-glucosyltransferase 2 | 2.4.1.115 | 0.442 | |
| 2wey | EV1 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.442 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 2j9g | ANP | Biotin carboxylase | 6.3.4.14 | 0.441 | |
| 2ol4 | JPN | Enoyl-ACP reductase | / | 0.441 | |
| 3ch6 | 311 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.441 | |
| 3zky | WT4 | Isopenicillin N synthase | 1.21.3.1 | 0.441 | |
| 4o1m | NAD | Enoyl-acyl carrier reductase | / | 0.441 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.441 | |
| 1s3u | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 4dpd | DHF | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.440 | |
| 4fcb | 0T7 | cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A | 3.1.4.17 | 0.440 | |
| 4fhd | 0TT | Spore photoproduct lyase | / | 0.440 |