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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d4oNAPNAD(P) transhydrogenase, mitochondrial

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1d4oNAPNAD(P) transhydrogenase, mitochondrial/1.000
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.662
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.20.623
1pt9TAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.615
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.20.546
2fr8NAPNAD(P) transhydrogenase subunit beta1.6.1.20.485
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.482
2fsvNAPNAD(P) transhydrogenase subunit beta1.6.1.20.464
1ptjNAPNAD(P) transhydrogenase subunit beta1.6.1.20.445