sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1cq8	PY6	Aspartate aminotransferase	2.6.1.1

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1cq8	PY6	Aspartate aminotransferase	2.6.1.1	1.000
1cq7	PY5	Aspartate aminotransferase	2.6.1.1	0.731
1toi	HCI	Aspartate aminotransferase	2.6.1.1	0.651
1maq	PGU	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.648
3qpg	3QP	Aspartate aminotransferase	2.6.1.1	0.615
1ivr	CBA	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.593
1asc	NPL	Aspartate aminotransferase	2.6.1.1	0.566
1akb	PPD	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.562
1map	KET	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.559
4dbc	3QP	Aspartate aminotransferase	2.6.1.1	0.557
1akc	PPE	Aspartate aminotransferase, mitochondrial	2.6.1.1	0.548
1toj	HCI	Aspartate aminotransferase	2.6.1.1	0.548
1cq6	PY4	Aspartate aminotransferase	2.6.1.1	0.544
1ahg	TYR_PLP	Aspartate aminotransferase	2.6.1.1	0.461
1arg	PPD	Aspartate aminotransferase	2.6.1.1	0.447
3otw	COA	Phosphopantetheine adenylyltransferase	/	0.447
1n5v	NOM	ActVA 6 protein	/	0.443