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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cjtFOKAdenylate cyclase type 2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1cjtFOKAdenylate cyclase type 2/1.000
1cjtFOKAdenylate cyclase type 5/1.000
1cjuFOKAdenylate cyclase type 2/0.762
1cjuFOKAdenylate cyclase type 5/0.762
1cs4FOKAdenylate cyclase type 2/0.679
1cs4FOKAdenylate cyclase type 5/0.679
1culFOKAdenylate cyclase type 2/0.663
1culFOKAdenylate cyclase type 5/0.663
1cjkFOKAdenylate cyclase type 2/0.658
1cjkFOKAdenylate cyclase type 5/0.658
1tl7FOKAdenylate cyclase type 2/0.657
1tl7FOKAdenylate cyclase type 5/0.657
3c15FOKAdenylate cyclase type 2/0.612
3c15FOKAdenylate cyclase type 5/0.612
1cjvFOKAdenylate cyclase type 2/0.594
1cjvFOKAdenylate cyclase type 5/0.594
2gvdFKPAdenylate cyclase type 2/0.562
2gvdFKPAdenylate cyclase type 5/0.562
3c16FOKAdenylate cyclase type 2/0.554
3c16FOKAdenylate cyclase type 5/0.554
1u0hFOKAdenylate cyclase type 2/0.552
1u0hFOKAdenylate cyclase type 5/0.552
3c14FOKAdenylate cyclase type 2/0.512
3c14FOKAdenylate cyclase type 5/0.512
3maaFKPAdenylate cyclase type 2/0.494
3maaFKPAdenylate cyclase type 5/0.494