sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1cc2	FAD	Cholesterol oxidase	1.1.3.6

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1cc2	FAD	Cholesterol oxidase	1.1.3.6	1.000
4u2s	FDA	Cholesterol oxidase	1.1.3.6	0.741
4u2l	SFD	Cholesterol oxidase	1.1.3.6	0.701
1mxt	FAE	Cholesterol oxidase	1.1.3.6	0.681
1n4u	FAE	Cholesterol oxidase	1.1.3.6	0.673
1cbo	FAD	Cholesterol oxidase	1.1.3.6	0.594
1ijh	FAD	Cholesterol oxidase	1.1.3.6	0.572
1n4v	FAD	Cholesterol oxidase	1.1.3.6	0.570
4xwr	FAD	Cholesterol oxidase	1.1.3.6	0.537
3cox	FAD	Cholesterol oxidase	1.1.3.6	0.516
3gyi	FAD	Cholesterol oxidase	1.1.3.6	0.502
3gyj	FAD	Cholesterol oxidase	1.1.3.6	0.483
4rek	FAD	Cholesterol oxidase	1.1.3.6	0.482
3cnj	FAD	Cholesterol oxidase	1.1.3.6	0.471
4xxg	FAD	Cholesterol oxidase	1.1.3.6	0.471