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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cboFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1cboFADCholesterol oxidase1.1.3.61.000
4u2lSFDCholesterol oxidase1.1.3.60.751
4xwrFADCholesterol oxidase1.1.3.60.701
1cc2FADCholesterol oxidase1.1.3.60.695
4xxgFADCholesterol oxidase1.1.3.60.694
1b4vFADCholesterol oxidase1.1.3.60.690
1ijhFADCholesterol oxidase1.1.3.60.688
1b8sFADCholesterol oxidase1.1.3.60.678
1n4vFADCholesterol oxidase1.1.3.60.664
1mxtFAECholesterol oxidase1.1.3.60.653
4rekFADCholesterol oxidase1.1.3.60.637
3gyiFADCholesterol oxidase1.1.3.60.629
1n4uFAECholesterol oxidase1.1.3.60.616
3gyjFADCholesterol oxidase1.1.3.60.606
4u2sFDACholesterol oxidase1.1.3.60.599
3cnjFADCholesterol oxidase1.1.3.60.561
1n4wFADCholesterol oxidase1.1.3.60.489
4u2tFADCholesterol oxidase1.1.3.60.470
3coxFADCholesterol oxidase1.1.3.60.456
2gewFADCholesterol oxidase1.1.3.60.449