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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c7fFMNFlavodoxin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1c7fFMNFlavodoxin/1.000
3f6rFMNFlavodoxin/0.557
5tgzFMNCannabinoid receptor 1/0.528
1bu5RBFFlavodoxin/0.512
4y7cFMNNADPH--cytochrome P450 reductase/0.500
1j9zFMNNADPH--cytochrome P450 reductase/0.496
1akrFMNFlavodoxin/0.495
1xyyFMNFlavodoxin/0.486
3ojxFMNNADPH--cytochrome P450 reductase/0.482
5fx2FMNFlavodoxin/0.476
3f90FMNFlavodoxin/0.474
1j9gFMNFlavodoxin/0.469
1azlFMNFlavodoxin/0.466
1akwFMNFlavodoxin/0.465
3f6sFMNFlavodoxin/0.456
1fx1FMNFlavodoxin/0.449
5xraFMNCannabinoid receptor 1/0.444
1akuFMNFlavodoxin/0.440