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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c1bGCAGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1c1bGCAGag-Pol polyprotein2.7.7.491.000
1rt2TNKGag-Pol polyprotein2.7.7.490.540
3ffi3OBGag-Pol polyprotein2.7.7.490.523
1klmSPPGag-Pol polyprotein2.7.7.490.494
4i7fNVEGag-Pol polyprotein2.7.7.490.481
1c1c612Gag-Pol polyprotein2.7.7.490.463
1tl3H20Gag-Pol polyprotein2.7.7.490.463
1tktH12Gag-Pol polyprotein2.7.7.490.462
1rt4UC1Gag-Pol polyprotein2.7.7.490.459
3is9AC7Gag-Pol polyprotein2.7.7.490.457
4i2pG73Gag-Pol polyprotein2.7.7.490.455
1rt1MKCGag-Pol polyprotein2.7.7.490.448
3qlhT27Gag-Pol polyprotein2.7.7.490.448
1tl1H18Gag-Pol polyprotein2.7.7.490.444
2ze2T27Gag-Pol polyprotein2.7.7.490.442