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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bu5RBFFlavodoxin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1bu5RBFFlavodoxin/1.000
3f6rFMNFlavodoxin/0.600
1xyyFMNFlavodoxin/0.548
1c7fFMNFlavodoxin/0.537
1akwFMNFlavodoxin/0.520
1akrFMNFlavodoxin/0.508
5fx2FMNFlavodoxin/0.506
4fx2FMNFlavodoxin/0.499
5tgzFMNCannabinoid receptor 1/0.499
1azlFMNFlavodoxin/0.480
4y7cFMNNADPH--cytochrome P450 reductase/0.478
1fx1FMNFlavodoxin/0.473
1j9gFMNFlavodoxin/0.472
4eph0RKCarnitine O-palmitoyltransferase 2, mitochondrial2.3.1.210.472
5xraFMNCannabinoid receptor 1/0.466
1j9zFMNNADPH--cytochrome P450 reductase/0.465
2fx2FMNFlavodoxin/0.464
1ykgFMNSulfite reductase [NADPH] flavoprotein alpha-component/0.458
3n3aFMNProtein NrdI/0.454
3ojxFMNNADPH--cytochrome P450 reductase/0.454
1akuFMNFlavodoxin/0.445
4b4w9L9Bifunctional protein FolD/0.445