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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bidUMPThymidylate synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1bidUMPThymidylate synthase/1.000
1aobDDUThymidylate synthase/0.639
1bduDURThymidylate synthase/0.633
2vetUMPThymidylate synthase/0.599
1f4eTPRThymidylate synthase/0.530
1jmgUMPThymidylate synthase/0.477
2g8aUMPThymidylate synthase/0.476
2g86UMPThymidylate synthase/0.465
2g89UMPThymidylate synthase/0.458
1tsvUMPThymidylate synthase/0.445
1jmfUMPThymidylate synthase/0.444