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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b4vFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1b4vFADCholesterol oxidase1.1.3.61.000
1ijhFADCholesterol oxidase1.1.3.60.835
1n4vFADCholesterol oxidase1.1.3.60.829
4xwrFADCholesterol oxidase1.1.3.60.777
1mxtFAECholesterol oxidase1.1.3.60.772
4u2lSFDCholesterol oxidase1.1.3.60.771
4xxgFADCholesterol oxidase1.1.3.60.766
1cc2FADCholesterol oxidase1.1.3.60.750
4u2sFDACholesterol oxidase1.1.3.60.747
1n4uFAECholesterol oxidase1.1.3.60.742
1b8sFADCholesterol oxidase1.1.3.60.733
1cboFADCholesterol oxidase1.1.3.60.725
4rekFADCholesterol oxidase1.1.3.60.706
3gyiFADCholesterol oxidase1.1.3.60.673
3gyjFADCholesterol oxidase1.1.3.60.670
3cnjFADCholesterol oxidase1.1.3.60.631
3b6dFAECholesterol oxidase1.1.3.60.597
1n1pFADCholesterol oxidase1.1.3.60.589
1n4wFADCholesterol oxidase1.1.3.60.587
4u2tFADCholesterol oxidase1.1.3.60.553
3coxFADCholesterol oxidase1.1.3.60.502