sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1arg | PPD | Aspartate aminotransferase | 2.6.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1arg | PPD | Aspartate aminotransferase | 2.6.1.1 | 1.000 | |
| 1ahg | TYR_PLP | Aspartate aminotransferase | 2.6.1.1 | 0.594 | |
| 1x28 | PGU | Aspartate aminotransferase | 2.6.1.1 | 0.588 | |
| 1cq8 | PY6 | Aspartate aminotransferase | 2.6.1.1 | 0.560 | |
| 3qpg | 3QP | Aspartate aminotransferase | 2.6.1.1 | 0.559 | |
| 1cq6 | PY4 | Aspartate aminotransferase | 2.6.1.1 | 0.551 | |
| 1asc | NPL | Aspartate aminotransferase | 2.6.1.1 | 0.542 | |
| 1toi | HCI | Aspartate aminotransferase | 2.6.1.1 | 0.540 | |
| 4dbc | 3QP | Aspartate aminotransferase | 2.6.1.1 | 0.530 | |
| 1akc | PPE | Aspartate aminotransferase, mitochondrial | 2.6.1.1 | 0.528 | |
| 1akb | PPD | Aspartate aminotransferase, mitochondrial | 2.6.1.1 | 0.527 | |
| 1cq7 | PY5 | Aspartate aminotransferase | 2.6.1.1 | 0.522 | |
| 1toj | HCI | Aspartate aminotransferase | 2.6.1.1 | 0.509 | |
| 1map | KET | Aspartate aminotransferase, mitochondrial | 2.6.1.1 | 0.503 | |
| 2ay5 | IOP | Aromatic-amino-acid aminotransferase | 2.6.1.57 | 0.479 | |
| 1tou | B1V | Fatty acid-binding protein, adipocyte | / | 0.475 | |
| 1tow | CRZ | Fatty acid-binding protein, adipocyte | / | 0.466 | |
| 2ea4 | F79 | Methionine aminopeptidase 2 | / | 0.464 | |
| 3tfu | PL8 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 2.6.1.62 | 0.460 | |
| 1g54 | FFB | Carbonic anhydrase 2 | 4.2.1.1 | 0.458 | |
| 3fr5 | I4A | Fatty acid-binding protein, adipocyte | / | 0.458 | |
| 1u1f | 183 | Uridine phosphorylase | 2.4.2.3 | 0.457 | |
| 1b9i | PXG | 3-amino-5-hydroxybenzoate synthase | 4.2.1.144 | 0.456 | |
| 1w19 | T5P | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.456 | |
| 3h3t | 16H | Collagen type IV alpha-3-binding protein | / | 0.456 | |
| 1yw8 | A75 | Methionine aminopeptidase 2 | / | 0.454 | |
| 1u1g | BBB | Uridine phosphorylase | 2.4.2.3 | 0.453 | |
| 1yci | NDF | Hypoxia-inducible factor 1-alpha inhibitor | 1.14.11.30 | 0.453 | |
| 4nhy | PD2 | Prolyl 3-hydroxylase OGFOD1 | 1.14.11 | 0.448 | |
| 3ei8 | PL5 | LL-diaminopimelate aminotransferase, chloroplastic | / | 0.447 | |
| 3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.446 | |
| 3fr4 | F8A | Fatty acid-binding protein, adipocyte | / | 0.444 | |
| 1g4o | BSB | Carbonic anhydrase 2 | 4.2.1.1 | 0.443 | |
| 3aej | AA5 | Methionine gamma-lyase | / | 0.442 | |
| 1nm6 | L86 | Prothrombin | 3.4.21.5 | 0.441 | |
| 1rft | PXM | Pyridoxal kinase | 2.7.1.35 | 0.440 | |
| 3sqz | COA | Putative hydroxymethylglutaryl-CoA synthase | / | 0.440 | |
| 4fhd | 0TT | Spore photoproduct lyase | / | 0.440 | |
| 4jxx | ATP | Glutamine--tRNA ligase | 6.1.1.18 | 0.440 |