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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a9zUPGUDP-glucose 4-epimerase5.1.3.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1a9zUPGUDP-glucose 4-epimerase5.1.3.21.000
1udcUFMUDP-glucose 4-epimerase5.1.3.20.650
1udaUFGUDP-glucose 4-epimerase5.1.3.20.640
1nahNADUDP-glucose 4-epimerase5.1.3.20.563
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.555
1hzjUD1UDP-glucose 4-epimerase/0.547
1udbUFGUDP-glucose 4-epimerase5.1.3.20.534
1a9yUPGUDP-glucose 4-epimerase5.1.3.20.531
1ek6UPGUDP-glucose 4-epimerase/0.525
1xelUPGUDP-glucose 4-epimerase5.1.3.20.523
1kvsUPGUDP-glucose 4-epimerase5.1.3.20.503
3enkUPGUDP-glucose 4-epimerase/0.500
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.483
2udpUPPUDP-glucose 4-epimerase5.1.3.20.463