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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a4lDCFAdenosine deaminase3.5.4.4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1a4lDCFAdenosine deaminase3.5.4.41.000
2adaHPRAdenosine deaminase3.5.4.40.582
1fkwPURAdenosine deaminase3.5.4.40.541
1wxyFRKAdenosine deaminase3.5.4.40.523
1ndzFR5Adenosine deaminase3.5.4.40.515
1ndyFR3Adenosine deaminase3.5.4.40.513
1qxlFR8Adenosine deaminase3.5.4.40.510
1uioHPRAdenosine deaminase3.5.4.40.497
1fkxPRHAdenosine deaminase3.5.4.40.488
1o5rFR9Adenosine deaminase3.5.4.40.481