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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5uviZMAAdenosine receptor A2a

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5uviZMAAdenosine receptor A2a/1.000
5k2bZMAAdenosine receptor A2a/0.751
5k2dZMAAdenosine receptor A2a/0.721
5k2cZMAAdenosine receptor A2a/0.652
5k2aZMAAdenosine receptor A2a/0.649
5iua6DXAdenosine receptor A2a/0.628
5jtbZMAAdenosine receptor A2a/0.624
3emlZMAAdenosine receptor A2a/0.590
5iu86DZAdenosine receptor A2a/0.577
4eiyZMAAdenosine receptor A2a/0.571
5iu4ZMAAdenosine receptor A2a/0.559
5iubCLRAdenosine receptor A2a/0.554
3vg9ZMAAdenosine receptor A2a/0.511
4uhrNGIAdenosine receptor A2a/0.510
4ug2NGIAdenosine receptor A2a/0.487
5g53NECAdenosine receptor A2a/0.469
3ds6A17Mitogen-activated protein kinase 14/0.467
3pwhZMAAdenosine receptor A2a/0.463
2y98MIVMycinamicin IV hydroxylase/epoxidase/0.459
4wo5324Serine/threonine-protein kinase B-raf2.7.11.10.456
2ydoADNAdenosine receptor A2a/0.452
3qakUKAAdenosine receptor A2a/0.449
1blzACVIsopenicillin N synthase1.21.3.10.444
4iaq2GM5-hydroxytryptamine receptor 1B/0.444
4q73FADBifunctional protein PutA/0.443
2y6fM9FIsopenicillin N synthase1.21.3.10.440
4nc3ERM5-hydroxytryptamine receptor 2B/0.440
5dp2NAPCurF/0.440