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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.41.000
1kquBR4Phospholipase A2, membrane associated/0.495
3u8dU8DPhospholipase A2, membrane associated/0.465
1db56INPhospholipase A2, membrane associated/0.463
1kvoOAPPhospholipase A2, membrane associated/0.459
1db48INPhospholipase A2, membrane associated/0.445
1dcyI3NPhospholipase A2, membrane associated/0.443
1aypINBPhospholipase A2, membrane associated/0.441