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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5kwvANPPantothenate synthetase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5kwvANPPantothenate synthetase/1.000
1n2hPAJPantothenate synthetase6.3.2.10.512
1n2gAPCPantothenate synthetase6.3.2.10.496
3isjA8DPantothenate synthetase6.3.2.10.489
3coy53HPantothenate synthetase6.3.2.10.480
1n2eAPCPantothenate synthetase6.3.2.10.469
1yidATPTryptophan--tRNA ligase 26.1.1.20.465
4ddhMS0Pantothenate synthetase6.3.2.10.446
5hg0SAMPantothenate synthetase/0.445