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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5hsaFASAlcohol oxidase 11.1.3.13

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5hsaFASAlcohol oxidase 11.1.3.131.000
4qi7FADCellobiose dehydrogenase/0.514
4qi4FADCellobiose dehydrogenase/0.512
4qi5FADCellobiose dehydrogenase/0.506
4udrFAD5-(hydroxymethyl)furfural oxidase/0.476
4udqFAD5-(hydroxymethyl)furfural oxidase/0.475
1n4uFAECholesterol oxidase1.1.3.60.471
4u2sFDACholesterol oxidase1.1.3.60.462
4mihFADPyranose 2-oxidase1.1.3.100.457
1cc2FADCholesterol oxidase1.1.3.60.456
1mxtFAECholesterol oxidase1.1.3.60.454
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.454
1galFADGlucose oxidase1.1.3.40.452
3k4nFADPyranose 2-oxidase/0.451
3coxFADCholesterol oxidase1.1.3.60.450
3b70NAPEnoyl reductase LovC10.449
4u2lSFDCholesterol oxidase1.1.3.60.446
3bg7FADPyranose 2-oxidase/0.444
2igoFADPyranose 2-oxidase/0.441
3gqvNAPEnoyl reductase LovC10.440
3gyiFADCholesterol oxidase1.1.3.60.440
3gyjFADCholesterol oxidase1.1.3.60.440